3 ms·

Thanks. They new site is snappy. Tripal I had never heard of. It uses "Chado" db schema which I have heard of (though flybase) which while flexible isn't alwa

Thanks. They new site is snappy. Tripal I had never heard of. It uses "Chado" db schema which I have heard of (though flybase) which while flexible isn't always performant. Performance gains and simplified development are so appealing (I have 12 tools to maintain in Java/perl/php).. Biogo is what I was looking for. https://github.com/biogo/biogo https://github.com/biogo/biogo

howeman 11y ago
You said above you 'may start rolling your own packages'. If you're interested in helping develop the numeric ecosystem, please come join us at gonum https://groups.google.com/forum/#!forum/gonum-dev https://groups.google.com/forum/#!forum/gonum-dev github.com/gonum. Dan (the lead developer of biogo) is very competent and I'm sure would love bug reports and PRs in biogo as well.
biomcgary 11y ago
Chado does have substantial performance problems for use as a webserver backend. We use elasticsearch for full-text search and as JSON document store, which improves performance substantially.