3 ms·
You're not going to VCF on a whole genome in several hours.
by jghn 11y ago
You're not going to VCF on a whole genome in several hours.
- gbveiuwlbiu 11y agoCould you please elaborate on this?
- adenadel 11y agoWith particular hardware and software you can. Edico Dragen claims speeds for bcl -> vcf of 20 minutes [1]. With Microsoft Research's snap aligner and 450GB of memory you can get whole genome alignment in ~30 minutes and then variant calling can be done in a couple hours. 1. http://www.edicogenome.com/dragen/dragen-gp/ http://www.edicogenome.com/dragen/dragen-gp/