5 ms·

Thanks for the updated list, Anthony! On the practical side, what packages are you guys using? I'm familiar with JavaPlex for Matlab: http://appliedtopology.g

• anthony_bak 11y ago
  For Mapper consider using PythonMapper by Daniel Müllner ( http://danifold.net/mapper/ http://danifold.net/mapper/ ). The UI is touchy - I use it mostly via scripts only. Mapper is pretty simple to implement (just a series of well understood pieces - the magic is in the interpretation/understanding what you've done). As an example consider the kepler-mapper project ( https://github.com/MLWave/kepler-mapper https://github.com/MLWave/kepler-mapper ). More lines of code are used for calling out to the d3 visualization than implementing the core mapper algorithm. For my persistent homology calculations I always use Dionysus ( http://www.mrzv.org/software/dionysus/ http://www.mrzv.org/software/dionysus/ ). Rumor has it a much improved parallelized version will be released soon.