I think it has more to do with the fact that it is just sugar by itself. From what I've read, it seems that the context of the sugar is what makes it "good" or

I think it has more to do with the fact that it is just sugar by itself. From what I've read, it seems that the context of the sugar is what makes it "good" or "bad", and that's because the effects are measured by how the food affects your blood sugar after eating it. This is tracked in the metric known as the glycemic index of the food. In fruits it is with fiber and plant material that results in your body taking longer to process the sugars and doesn't give a spike in blood sugar like eating the same amount of refined sugar would. Honey is just lacking the context that most natural sugars is and is thus more similar to refined sugar.